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Test Case 3: An antibiotic in water

Valinomycin in 1223 spc water molecules. The temperature is controlled by a Nosé-Hoover thermostat while electrostatics are handled by a shifted Coulombic potential. The water is defined as a rigid body while bond constraints are applied to all chemical bonds in the valinomycin. Truncated octahedral boundary conditions are used.



W Smith 2003-05-12